3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03221

Details:

PFam ID : PF03221

PFam Domain Description : Tc5 transposase DNA-binding domain

Number of Sequence in 50% Dataset : 228

Number of Sequence in Full Dataset : 667

Average sequence length: 63.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03221	D0N5S4_PHYIT_103_144	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03221	F0X298_9STRA_19_84	100

Sequence based PCA Plot of the family - PF03221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay