3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03220

Details:

PFam ID : PF03220

PFam Domain Description : Tombusvirus P19 core protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 13

Average sequence length: 158.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03220	D8F840_9DELT_122_347	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03220	Q80R12_9TOMB_1_168	100

Sequence based PCA Plot of the family - PF03220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay