3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03206

Details:

PFam ID : PF03206

PFam Domain Description : Nitrogen fixation protein NifW

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 113

Average sequence length: 101.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03206	C9QGC4_VIBOR_1_78	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03206	A1WTR0_HALHL_1_107	100

Sequence based PCA Plot of the family - PF03206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=68 Length=8
Motif3 Start=18 Length=14
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay