3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03205

Details:

PFam ID : PF03205

PFam Domain Description : Molybdopterin guanine dinucleotide synthesis protein B

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 934

Average sequence length: 123.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03205	C9YXM3_STRSW_242_281	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03205	D2V7Q4_NAEGR_311_445	99.8

Sequence based PCA Plot of the family - PF03205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=17
Motif2 Start=34 Length=8
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay