3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03201

Details:

PFam ID : PF03201

PFam Domain Description : H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 30

Average sequence length: 94.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03201	F0S2B6_DESTD_196_294	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03201	F0S2B6_DESTD_196_294	100

Sequence based PCA Plot of the family - PF03201 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay