3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03200

Details:

PFam ID : PF03200

PFam Domain Description : Mannosyl oligosaccharide glucosidase

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 339

Average sequence length: 390.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03200	A8XC71_CAEBR_497_623	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03200	C5L403_9ALVE_1202_1380	100

Sequence based PCA Plot of the family - PF03200 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=502 Length=8
Motif2 Start=665 Length=8
Motif3 Start=646 Length=8
Motif4 Start=402 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay