3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03199

Details:

PFam ID : PF03199

PFam Domain Description : Eukaryotic glutathione synthase

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 209

Average sequence length: 103.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03199	C4Q7I9_SCHMA_490_600	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03199	A6F7N8_9GAMM_203_313	100

Sequence based PCA Plot of the family - PF03199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=113 Length=11
Motif3 Start=134 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay