3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03198

Details:

PFam ID : PF03198

PFam Domain Description : Glucanosyltransferase

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 314

Average sequence length: 291.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03198	B8CBH7_THAPS_1_216	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03198	B5WY53_COLGR_26_135	100

Sequence based PCA Plot of the family - PF03198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=71 Length=8
Motif3 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay