3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03194

Details:

PFam ID : PF03194

PFam Domain Description : LUC7 N_terminus

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 232

Average sequence length: 230.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03194	A0DIB2_PARTE_2_259	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03194	C1BR63_9MAXI_3_337	100

Sequence based PCA Plot of the family - PF03194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=296 Length=11
Motif3 Start=56 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay