3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03188

Details:

PFam ID : PF03188

PFam Domain Description : Eukaryotic cytochrome b561

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 553

Average sequence length: 130.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03188	B0D3H0_LACBS_242_330	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03188	B8C2M5_THAPS_93_255	100

Sequence based PCA Plot of the family - PF03188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay