3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03187

Details:

PFam ID : PF03187

PFam Domain Description : Corona nucleocapsid I protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 11

Average sequence length: 168.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03187	E6RLW0_PSEU9_12_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03187	A8R4E0_9BETC_1_206	100

Sequence based PCA Plot of the family - PF03187 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay