3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03184

Details:

PFam ID : PF03184

PFam Domain Description : DDE superfamily endonuclease

Number of Sequence in 50% Dataset : 424

Number of Sequence in Full Dataset : 1166

Average sequence length: 149.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03184	E1ZXW2_9HYME_1_132	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03184	E6R650_CRYGW_8_115	99.5

Sequence based PCA Plot of the family - PF03184 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=8 Length=8
Motif3 Start=30 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay