3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03183

Details:

PFam ID : PF03183

PFam Domain Description : Borrelia repeat protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 22

Average sequence length: 17.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03183	A9RG26_PHYPA_129_339	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03183	Q9RGA8_BORHE_132_149	90.4

Sequence based PCA Plot of the family - PF03183 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay