3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03180

Details:

PFam ID : PF03180

PFam Domain Description : NLPA lipoprotein

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 1114

Average sequence length: 232.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03180	B2JUA7_BURP8_27_100	58.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03180	C2D0M4_LACBR_38_281	100

Sequence based PCA Plot of the family - PF03180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=147 Length=8
Motif3 Start=226 Length=8
Motif4 Start=47 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay