3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03179

Details:

PFam ID : PF03179

PFam Domain Description : Vacuolar (H+)-ATPase G subunit

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 226

Average sequence length: 98.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03179	E1EZB4_GIAIA_3_106	28.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03179	F1AQ74_CARME_1_56	100

Sequence based PCA Plot of the family - PF03179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=40 Length=8
Motif3 Start=5 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay