3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03178

Details:

PFam ID : PF03178

PFam Domain Description : CPSF A subunit region

Number of Sequence in 50% Dataset : 191

Number of Sequence in Full Dataset : 464

Average sequence length: 286.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03178	C4Q4W9_SCHMA_834_982	66.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03178	A2FWA8_TRIVA_740_975	99.7

Sequence based PCA Plot of the family - PF03178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay