3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03175

Details:

PFam ID : PF03175

PFam Domain Description : DNA polymerase type B, organellar and viral

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 340

Average sequence length: 321.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03175	D2A159_TRICA_94_749	77.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03175	D6RR51_COPC7_434_529	96.4

Sequence based PCA Plot of the family - PF03175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=558 Length=8
Motif2 Start=363 Length=8
Motif3 Start=6 Length=11
Motif4 Start=648 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay