3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03174

Details:

PFam ID : PF03174

PFam Domain Description : Chitobiase/beta-hexosaminidase C-terminal domain

Number of Sequence in 50% Dataset : 205

Number of Sequence in Full Dataset : 633

Average sequence length: 74.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03174	E5V7D2_9BACE_475_550	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03174	Q04A74_LACDB_1572_1637	99.5

Sequence based PCA Plot of the family - PF03174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=27
Motif2 Start=7 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay