3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03171

Details:

PFam ID : PF03171

PFam Domain Description : 2OG-Fe(II) oxygenase superfamily

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 2638

Average sequence length: 103.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03171	B8PFU0_POSPM_158_272	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03171	B9GUN0_POPTR_29_84	84

Sequence based PCA Plot of the family - PF03171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=65 Length=11
Motif2 Start=5 Length=25
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay