3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03169

Details:

PFam ID : PF03169

PFam Domain Description : OPT oligopeptide transporter protein

Number of Sequence in 50% Dataset : 308

Number of Sequence in Full Dataset : 1180

Average sequence length: 493.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03169	C1MTT4_MICPC_112_213	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03169	D1Z0A5_METPS_286_528	98.5

Sequence based PCA Plot of the family - PF03169 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=180 Length=8
Motif3 Start=280 Length=8
Motif4 Start=245 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay