3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03166

Details:

PFam ID : PF03166

PFam Domain Description : MH2 domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 154

Average sequence length: 166.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03166	E4XBL2_OIKDI_397_597	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03166	E4XXS7_OIKDI_98_292	100

Sequence based PCA Plot of the family - PF03166 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=174 Length=8
Motif3 Start=197 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay