3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03165

Details:

PFam ID : PF03165

PFam Domain Description : MH1 domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 144

Average sequence length: 97

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03165	B7Z9Q2_HUMAN_1_26	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03165	E4XBL2_OIKDI_89_205	99.3

Sequence based PCA Plot of the family - PF03165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay