3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03164

Details:

PFam ID : PF03164

PFam Domain Description : Trafficking protein Mon1

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 178

Average sequence length: 320.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03164	B2AY80_PODAN_461_635	76

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03164	A5BAS9_VITVI_349_450	100

Sequence based PCA Plot of the family - PF03164 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=422 Length=8
Motif3 Start=21 Length=8
Motif4 Start=231 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay