3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03161

Details:

PFam ID : PF03161

PFam Domain Description : LAGLIDADG DNA endonuclease family

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 167

Average sequence length: 168.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03161	E7E833_PICAD_100_284	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03161	O79862_9CHLO_67_265	100

Sequence based PCA Plot of the family - PF03161 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay