3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03160

Details:

PFam ID : PF03160

PFam Domain Description : Calx-beta domain

Number of Sequence in 50% Dataset : 515

Number of Sequence in Full Dataset : 1547

Average sequence length: 97.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03160	A7SVT8_NEMVE_135_200	84.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03160	A7T658_NEMVE_40_108	100

Sequence based PCA Plot of the family - PF03160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=106 Length=8
Motif2 Start=81 Length=8
Motif3 Start=117 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay