3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03159

Details:

PFam ID : PF03159

PFam Domain Description : XRN 5'-3' exonuclease N-terminus

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 374

Average sequence length: 189.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03159	D2VA46_NAEGR_1_278	64.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03159	Q4DQY9_TRYCR_105_238	100

Sequence based PCA Plot of the family - PF03159 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=2 Length=18
Motif3 Start=178 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay