3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03157

Details:

PFam ID : PF03157

PFam Domain Description : High molecular weight glutenin subunit

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 368

Average sequence length: 108.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03157	B3S4W6_TRIAD_20_64	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03157	Q1HTZ6_9POAL_178_207	95.3

Sequence based PCA Plot of the family - PF03157 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=216 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay