3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03155

Details:

PFam ID : PF03155

PFam Domain Description : ALG6, ALG8 glycosyltransferase family

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 333

Average sequence length: 344.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03155	B3S4W6_TRIAD_20_64	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03155	C1E537_MICSR_34_572	100

Sequence based PCA Plot of the family - PF03155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=170 Length=8
Motif2 Start=67 Length=8
Motif3 Start=36 Length=8
Motif4 Start=209 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay