3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03154

Details:

PFam ID : PF03154

PFam Domain Description : Atrophin-1 family

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 45

Average sequence length: 485.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03154	E5SR40_TRISP_562_874	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03154	A3KQ08_DANRE_2_295	100

Sequence based PCA Plot of the family - PF03154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay