3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03152

Details:

PFam ID : PF03152

PFam Domain Description : Ubiquitin fusion degradation protein UFD1

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 216

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03152	Q4XQQ1_PLACH_60_165	69.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03152	Q5CTG1_CRYPV_68_288	100

Sequence based PCA Plot of the family - PF03152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=136 Length=11
Motif2 Start=45 Length=8
Motif3 Start=87 Length=8
Motif4 Start=208 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay