3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03151

Details:

PFam ID : PF03151

PFam Domain Description : Triose-phosphate Transporter family

Number of Sequence in 50% Dataset : 289

Number of Sequence in Full Dataset : 1185

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03151	Q5GMH1_MOUSE_144_199	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03151	F0XXX4_9STRA_160_324	94.4

Sequence based PCA Plot of the family - PF03151 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=13 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay