3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03150

Details:

PFam ID : PF03150

PFam Domain Description : Di-haem cytochrome c peroxidase

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 844

Average sequence length: 161.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03150	D0LGH3_HALO1_570_777	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03150	B4X5J7_9GAMM_93_329	100

Sequence based PCA Plot of the family - PF03150 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=27
Motif2 Start=225 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay