3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03147

Details:

PFam ID : PF03147

PFam Domain Description : Ferredoxin-fold anticodon binding domain

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 1307

Average sequence length: 93.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03147	B9PE47_POPTR_283_327	83.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03147	F2U106_9EUKA_128_244	100

Sequence based PCA Plot of the family - PF03147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=105 Length=11
Motif3 Start=120 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay