3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03146

Details:

PFam ID : PF03146

PFam Domain Description : Agrin NtA domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 9

Average sequence length: 97.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03146	F1P3E3_CHICK_1_34	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03146	C3XQ33_BRAFL_35_164	100

Sequence based PCA Plot of the family - PF03146 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay