3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03144

Details:

PFam ID : PF03144

PFam Domain Description : Elongation factor Tu domain 2

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 8716

Average sequence length: 69.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03144	Q381P2_9TRYP_491_563	51.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03144	Q381P2_9TRYP_491_563	69

Sequence based PCA Plot of the family - PF03144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay