3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03143

Details:

PFam ID : PF03143

PFam Domain Description : Elongation factor Tu C-terminal domain

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 2307

Average sequence length: 90.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03143	A9CTU7_ENTBH_1_60	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03143	E3DQ37_HALPG_270_362	97.4

Sequence based PCA Plot of the family - PF03143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=71 Length=20
Motif2 Start=8 Length=11
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay