3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03142

Details:

PFam ID : PF03142

PFam Domain Description : Chitin synthase

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 405

Average sequence length: 278.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03142	E3K2F8_PUCGT_1528_1727	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03142	Q2UDN9_ASPOR_355_600	95.2

Sequence based PCA Plot of the family - PF03142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=215 Length=8
Motif3 Start=24 Length=8
Motif4 Start=231 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay