3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03139

Details:

PFam ID : PF03139

PFam Domain Description : Vanadium/alternative nitrogenase delta subunit

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 35

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03139	E3XBZ7_ANODA_81_404	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03139	B9E2E5_CLOK1_1_112	100

Sequence based PCA Plot of the family - PF03139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=20
Motif2 Start=1 Length=8
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay