3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03137

Details:

PFam ID : PF03137

PFam Domain Description : Organic Anion Transporter Polypeptide (OATP) family

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 467

Average sequence length: 387.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03137	E3XBZ7_ANODA_81_404	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03137	B7QEY7_IXOSC_185_435	100

Sequence based PCA Plot of the family - PF03137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=171 Length=8
Motif3 Start=353 Length=8
Motif4 Start=637 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay