3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03135

Details:

PFam ID : PF03135

PFam Domain Description : CagE, TrbE, VirB family, component of type IV transporter system

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 453

Average sequence length: 179.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03135	B9Y0V4_HELPY_1_60	80.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03135	E9I3X9_DAPPU_115_252	100

Sequence based PCA Plot of the family - PF03135 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay