3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03133

Details:

PFam ID : PF03133

PFam Domain Description : Tubulin-tyrosine ligase family

Number of Sequence in 50% Dataset : 328

Number of Sequence in Full Dataset : 933

Average sequence length: 262.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03133	D8U1Y3_VOLCA_281_378	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03133	A2EK98_TRIVA_321_449	100

Sequence based PCA Plot of the family - PF03133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=8
Motif2 Start=227 Length=22
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay