3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03131

Details:

PFam ID : PF03131

PFam Domain Description : bZIP Maf transcription factor

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 84

Average sequence length: 90.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03131	Q4SZ36_TETNG_308_354	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03131	A9UVH7_MONBE_180_276	100

Sequence based PCA Plot of the family - PF03131 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=5 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay