3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03129

Details:

PFam ID : PF03129

PFam Domain Description : Anticodon binding domain

Number of Sequence in 50% Dataset : 386

Number of Sequence in Full Dataset : 5393

Average sequence length: 92.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03129	E9CFZ3_9EUKA_654_775	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03129	D8UCJ7_VOLCA_48_143	100

Sequence based PCA Plot of the family - PF03129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=4 Length=8
Motif3 Start=31 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay