3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03128

Details:

PFam ID : PF03128

PFam Domain Description : CXCXC repeat

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 118

Average sequence length: 13.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03128	BAR3_CHITE_1356_1369	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03128	BAR3_CHITE_420_433	91.4

Sequence based PCA Plot of the family - PF03128 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay