3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03127

Details:

PFam ID : PF03127

PFam Domain Description : GAT domain

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 319

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03127	C4QMM4_SCHMA_367_475	15.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03127	C4QMM4_SCHMA_367_475	100

Sequence based PCA Plot of the family - PF03127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay