3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03125

Details:

PFam ID : PF03125

PFam Domain Description : C. elegans Sre G protein-coupled chemoreceptor

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 191

Average sequence length: 294.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03125	Q9U2L6_CAEEL_2_326	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03125	Q9U2L6_CAEEL_2_326	99.4

Sequence based PCA Plot of the family - PF03125 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8
Motif3 Start=105 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay