3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03124

Details:

PFam ID : PF03124

PFam Domain Description : EXS family

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 372

Average sequence length: 290.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03124	E2M4X4_MONPE_1_46	85.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03124	D0NCA5_PHYIT_307_464	100

Sequence based PCA Plot of the family - PF03124 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay