3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03123

Details:

PFam ID : PF03123

PFam Domain Description : CAT RNA binding domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 512

Average sequence length: 57.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03123	E4IVI1_ENTFC_1_49	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03123	C6CTN7_PAESJ_7_68	100

Sequence based PCA Plot of the family - PF03123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=44 Length=8
Motif2 Start=26 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay