3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03122

Details:

PFam ID : PF03122

PFam Domain Description : Herpes virus major capsid protein

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 56

Average sequence length: 877.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03122	Q9IV78_9HERP_1_56	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03122	Q69236_BHV4_1_149	100

Sequence based PCA Plot of the family - PF03122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=37 Length=8
Motif3 Start=159 Length=11
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay