3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03121

Details:

PFam ID : PF03121

PFam Domain Description : Herpesviridae UL52/UL70 DNA primase

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 111

Average sequence length: 66.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03121	D8U1L6_VOLCA_1213_1266	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03121	D7MS85_ARALL_455_489	67

Sequence based PCA Plot of the family - PF03121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=21
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay